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dna clean & concentrator-25  (Zymo Research)


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    Structured Review

    Zymo Research dna clean & concentrator-25
    Dna Clean & Concentrator 25, supplied by Zymo Research, used in various techniques. Bioz Stars score: 99/100, based on 1044 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/dna+clean+concentrator/DNA+Clean+%26+Concentrator-25/custom%40d4033%4042730989
    Average 99 stars, based on 1044 article reviews
    dna clean & concentrator-25 - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Purification:

    Article Title: Repurposed hnRNPC binds mature mRNAs and safeguards the mitotic transcriptome
    Article Snippet: The product was size-selected using Pippin Prep and a 3% agarose cassette, and a second PCR was performed using Illumina-indexed primers. .. Final libraries were purified (Zymo DNA Clean & Concentrator), assessed, and quantified by TapeStation, and Illumina-sequenced (GEO, GSE307226 ). .. fCLIP .fastq files were demultiplexed using Bcl2fastq (Illumina) and Cutadapt [–adapter = NNTGACTGTGGAATTCTCGGGTGCCAAGG, –no trim] [ ] (GEO GSE307226 ) and submitted to Paralyzer [ ] ( https://github.com/ohlerlab/PARpipe ) for assessing hnRNPC binding sites .

    Article Title: High-throughput screening reveals mechanisms of environmental control of germination in a fungal thermophile.
    Article Snippet: Unique barcode regions were amplified using Q5 High-Fidelity DNA Polymerase with GC Enhancer (NEB M0491S) and primers target ing constant priming sites flanking each barcode, yielding a ~185 bp Illumina-ready amplicon (53). .. Amplicons were purified using Zymo DNA Clean & Concentrator (D4014), quantified using a Qubit 3.0 fluorometer, pooled in equimolar ratios within each batch. .. Replicates of Batch 1 (the ~4,000-mutant library) were sequenced on an Illumina MiSeq platform, and replicates of Batch 2 (the ~13,000-mutant library) were sequenced on an Illumina NextSeq P2 platform (100-cycle single-end).

    Plasmid Preparation:

    Article Title: NaP-TRAP: A versatile and accessible workflow to dissect principles of translational regulation and mRNA stability
    Article Snippet: .. Plasmid templates (see Supporting Information : Table S1 for all sequences) All the plasmid constructs used in this study were cloned in pCS2+ vector which was generously gifted by Antonio Giraldez lab . Nuclease-free water (Sigma-Aldrich, Cat. No. W4502-1L) 1 M TRIS (Thermo Fisher Scientific, Cat. No. 15567027) KAPA HiFi HotStart Polymerase Readymix (Roche, Cat. No. 07958927001) Oligos (see Supporting Information : Table S1) ordered from Sigma or IDT with standard desalting Oligo pools from GenScript and Twist Bioscience Thermal cycler (BIO-RAD, Model No. S1000) DNA Clean & Concentrator (Zymo, Cat. No. D4006) 6X Gel loading dye (New England Biolabs, Cat. No. B7025) EtBr (BIO-RAD Cat. No. 1610433) 1 kb Plus DNA Ladder (New England Biolabs, Cat. No. N3200) TAE buffer (see REAGENTS AND SOLUTIONS ) Agarose gel 1% (wt/vol, see REAGENTS AND SOLUTIONS ) mMessage mMachine SP6 RNA Polymerase kit (Thermo Fisher Scientific, Cat. No. AM1340) DNase I (New England Biolabs, Cat. No. M0303S) RNA Clean & Concentrator-5 (Zymo, Cat. No. R1013) Filter-tips 20 μL, 200 μL and 1,000 μL (RAININ, Cat. Nos. .. Plasmid templates (see Supporting Information : Table S1 for all sequences) All the plasmid constructs used in this study were cloned in pCS2+ vector which was generously gifted by Antonio Giraldez lab . Nuclease-free water (Sigma-Aldrich, Cat. No. W4502-1L) 1 M TRIS (Thermo Fisher Scientific, Cat. No. 15567027) KAPA HiFi HotStart Polymerase Readymix (Roche, Cat. No. 07958927001) Oligos (see Supporting Information : Table S1) ordered from Sigma or IDT with standard desalting Oligo pools from GenScript and Twist Bioscience Thermal cycler (BIO-RAD, Model No. S1000) DNA Clean & Concentrator (Zymo, Cat. No. D4006) 6X Gel loading dye (New England Biolabs, Cat. No. B7025) EtBr (BIO-RAD Cat. No. 1610433) 1 kb Plus DNA Ladder (New England Biolabs, Cat. No. N3200) TAE buffer (see REAGENTS AND SOLUTIONS ) Agarose gel 1% (wt/vol, see REAGENTS AND SOLUTIONS ) mMessage mMachine SP6 RNA Polymerase kit (Thermo Fisher Scientific, Cat. No. AM1340) DNase I (New England Biolabs, Cat. No. M0303S) RNA Clean & Concentrator-5 (Zymo, Cat. No. R1013) Filter-tips 20 μL, 200 μL and 1,000 μL (RAININ, Cat. Nos.

    Construct:

    Article Title: NaP-TRAP: A versatile and accessible workflow to dissect principles of translational regulation and mRNA stability
    Article Snippet: .. Plasmid templates (see Supporting Information : Table S1 for all sequences) All the plasmid constructs used in this study were cloned in pCS2+ vector which was generously gifted by Antonio Giraldez lab . Nuclease-free water (Sigma-Aldrich, Cat. No. W4502-1L) 1 M TRIS (Thermo Fisher Scientific, Cat. No. 15567027) KAPA HiFi HotStart Polymerase Readymix (Roche, Cat. No. 07958927001) Oligos (see Supporting Information : Table S1) ordered from Sigma or IDT with standard desalting Oligo pools from GenScript and Twist Bioscience Thermal cycler (BIO-RAD, Model No. S1000) DNA Clean & Concentrator (Zymo, Cat. No. D4006) 6X Gel loading dye (New England Biolabs, Cat. No. B7025) EtBr (BIO-RAD Cat. No. 1610433) 1 kb Plus DNA Ladder (New England Biolabs, Cat. No. N3200) TAE buffer (see REAGENTS AND SOLUTIONS ) Agarose gel 1% (wt/vol, see REAGENTS AND SOLUTIONS ) mMessage mMachine SP6 RNA Polymerase kit (Thermo Fisher Scientific, Cat. No. AM1340) DNase I (New England Biolabs, Cat. No. M0303S) RNA Clean & Concentrator-5 (Zymo, Cat. No. R1013) Filter-tips 20 μL, 200 μL and 1,000 μL (RAININ, Cat. Nos. .. Plasmid templates (see Supporting Information : Table S1 for all sequences) All the plasmid constructs used in this study were cloned in pCS2+ vector which was generously gifted by Antonio Giraldez lab . Nuclease-free water (Sigma-Aldrich, Cat. No. W4502-1L) 1 M TRIS (Thermo Fisher Scientific, Cat. No. 15567027) KAPA HiFi HotStart Polymerase Readymix (Roche, Cat. No. 07958927001) Oligos (see Supporting Information : Table S1) ordered from Sigma or IDT with standard desalting Oligo pools from GenScript and Twist Bioscience Thermal cycler (BIO-RAD, Model No. S1000) DNA Clean & Concentrator (Zymo, Cat. No. D4006) 6X Gel loading dye (New England Biolabs, Cat. No. B7025) EtBr (BIO-RAD Cat. No. 1610433) 1 kb Plus DNA Ladder (New England Biolabs, Cat. No. N3200) TAE buffer (see REAGENTS AND SOLUTIONS ) Agarose gel 1% (wt/vol, see REAGENTS AND SOLUTIONS ) mMessage mMachine SP6 RNA Polymerase kit (Thermo Fisher Scientific, Cat. No. AM1340) DNase I (New England Biolabs, Cat. No. M0303S) RNA Clean & Concentrator-5 (Zymo, Cat. No. R1013) Filter-tips 20 μL, 200 μL and 1,000 μL (RAININ, Cat. Nos.

    Clone Assay:

    Article Title: NaP-TRAP: A versatile and accessible workflow to dissect principles of translational regulation and mRNA stability
    Article Snippet: .. Plasmid templates (see Supporting Information : Table S1 for all sequences) All the plasmid constructs used in this study were cloned in pCS2+ vector which was generously gifted by Antonio Giraldez lab . Nuclease-free water (Sigma-Aldrich, Cat. No. W4502-1L) 1 M TRIS (Thermo Fisher Scientific, Cat. No. 15567027) KAPA HiFi HotStart Polymerase Readymix (Roche, Cat. No. 07958927001) Oligos (see Supporting Information : Table S1) ordered from Sigma or IDT with standard desalting Oligo pools from GenScript and Twist Bioscience Thermal cycler (BIO-RAD, Model No. S1000) DNA Clean & Concentrator (Zymo, Cat. No. D4006) 6X Gel loading dye (New England Biolabs, Cat. No. B7025) EtBr (BIO-RAD Cat. No. 1610433) 1 kb Plus DNA Ladder (New England Biolabs, Cat. No. N3200) TAE buffer (see REAGENTS AND SOLUTIONS ) Agarose gel 1% (wt/vol, see REAGENTS AND SOLUTIONS ) mMessage mMachine SP6 RNA Polymerase kit (Thermo Fisher Scientific, Cat. No. AM1340) DNase I (New England Biolabs, Cat. No. M0303S) RNA Clean & Concentrator-5 (Zymo, Cat. No. R1013) Filter-tips 20 μL, 200 μL and 1,000 μL (RAININ, Cat. Nos. .. Plasmid templates (see Supporting Information : Table S1 for all sequences) All the plasmid constructs used in this study were cloned in pCS2+ vector which was generously gifted by Antonio Giraldez lab . Nuclease-free water (Sigma-Aldrich, Cat. No. W4502-1L) 1 M TRIS (Thermo Fisher Scientific, Cat. No. 15567027) KAPA HiFi HotStart Polymerase Readymix (Roche, Cat. No. 07958927001) Oligos (see Supporting Information : Table S1) ordered from Sigma or IDT with standard desalting Oligo pools from GenScript and Twist Bioscience Thermal cycler (BIO-RAD, Model No. S1000) DNA Clean & Concentrator (Zymo, Cat. No. D4006) 6X Gel loading dye (New England Biolabs, Cat. No. B7025) EtBr (BIO-RAD Cat. No. 1610433) 1 kb Plus DNA Ladder (New England Biolabs, Cat. No. N3200) TAE buffer (see REAGENTS AND SOLUTIONS ) Agarose gel 1% (wt/vol, see REAGENTS AND SOLUTIONS ) mMessage mMachine SP6 RNA Polymerase kit (Thermo Fisher Scientific, Cat. No. AM1340) DNase I (New England Biolabs, Cat. No. M0303S) RNA Clean & Concentrator-5 (Zymo, Cat. No. R1013) Filter-tips 20 μL, 200 μL and 1,000 μL (RAININ, Cat. Nos.

    Agarose Gel Electrophoresis:

    Article Title: NaP-TRAP: A versatile and accessible workflow to dissect principles of translational regulation and mRNA stability
    Article Snippet: .. Plasmid templates (see Supporting Information : Table S1 for all sequences) All the plasmid constructs used in this study were cloned in pCS2+ vector which was generously gifted by Antonio Giraldez lab . Nuclease-free water (Sigma-Aldrich, Cat. No. W4502-1L) 1 M TRIS (Thermo Fisher Scientific, Cat. No. 15567027) KAPA HiFi HotStart Polymerase Readymix (Roche, Cat. No. 07958927001) Oligos (see Supporting Information : Table S1) ordered from Sigma or IDT with standard desalting Oligo pools from GenScript and Twist Bioscience Thermal cycler (BIO-RAD, Model No. S1000) DNA Clean & Concentrator (Zymo, Cat. No. D4006) 6X Gel loading dye (New England Biolabs, Cat. No. B7025) EtBr (BIO-RAD Cat. No. 1610433) 1 kb Plus DNA Ladder (New England Biolabs, Cat. No. N3200) TAE buffer (see REAGENTS AND SOLUTIONS ) Agarose gel 1% (wt/vol, see REAGENTS AND SOLUTIONS ) mMessage mMachine SP6 RNA Polymerase kit (Thermo Fisher Scientific, Cat. No. AM1340) DNase I (New England Biolabs, Cat. No. M0303S) RNA Clean & Concentrator-5 (Zymo, Cat. No. R1013) Filter-tips 20 μL, 200 μL and 1,000 μL (RAININ, Cat. Nos. .. Plasmid templates (see Supporting Information : Table S1 for all sequences) All the plasmid constructs used in this study were cloned in pCS2+ vector which was generously gifted by Antonio Giraldez lab . Nuclease-free water (Sigma-Aldrich, Cat. No. W4502-1L) 1 M TRIS (Thermo Fisher Scientific, Cat. No. 15567027) KAPA HiFi HotStart Polymerase Readymix (Roche, Cat. No. 07958927001) Oligos (see Supporting Information : Table S1) ordered from Sigma or IDT with standard desalting Oligo pools from GenScript and Twist Bioscience Thermal cycler (BIO-RAD, Model No. S1000) DNA Clean & Concentrator (Zymo, Cat. No. D4006) 6X Gel loading dye (New England Biolabs, Cat. No. B7025) EtBr (BIO-RAD Cat. No. 1610433) 1 kb Plus DNA Ladder (New England Biolabs, Cat. No. N3200) TAE buffer (see REAGENTS AND SOLUTIONS ) Agarose gel 1% (wt/vol, see REAGENTS AND SOLUTIONS ) mMessage mMachine SP6 RNA Polymerase kit (Thermo Fisher Scientific, Cat. No. AM1340) DNase I (New England Biolabs, Cat. No. M0303S) RNA Clean & Concentrator-5 (Zymo, Cat. No. R1013) Filter-tips 20 μL, 200 μL and 1,000 μL (RAININ, Cat. Nos.

    Polymerase Chain Reaction:

    Article Title: Exosomal microRNAs from Alveolar Macrophages Reveal a Protective Role of the Lung Microbiome Against Oncogenic Signaling During PAH Exposure
    Article Snippet: To prepare the library, the NEBNext small RNA sample library preparation kit (New England BioLabs, Ipswich, MA, USA) was used with ~5 ng of total RNA determined by the Bioanalyzer RNA 6000 Pico Kit (Agilent, Santa Clara, CA, USA) in a 5 μL solution as input, following the manufacturer’s protocol except for a modification of library size selection to increase small RNA detection sensitivity and specificity. .. After 15 cycles of PCR for indexing and library enrichment, an equal volume of 10 μL PCR mix (library without size selection) per sample together with the same volume of the negative control were pooled, followed by DNA cleanup using DNA Clean & Concentrator (Zymo Research, Irvine, CA, USA) and mixed with 135 and 319 bp custom-made ladders targeting the library’s 16–24 miRNA cDNA insert. .. Next, precise size selection of the 135–319 bp library via 2.75% agarose gel electrophoresis was performed, and library concentration was measured by qPCR using the NEBNext Library Quant Kit (New England BioLabs) on a QuantStudio 5 Real-Time PCR System (Thermo Fisher Scientific).

    Article Title: Retracing and rewriting the evolutionary trajectories of mammalian developmental enhancers
    Article Snippet: .. All PCR steps were cleaned up with DNA Clean & Concentrator (Zymo Research), eluted in 12 μl of water and quantified with a spectrophotometer (Nanodrop). ..

    Size Selection:

    Article Title: Exosomal microRNAs from Alveolar Macrophages Reveal a Protective Role of the Lung Microbiome Against Oncogenic Signaling During PAH Exposure
    Article Snippet: To prepare the library, the NEBNext small RNA sample library preparation kit (New England BioLabs, Ipswich, MA, USA) was used with ~5 ng of total RNA determined by the Bioanalyzer RNA 6000 Pico Kit (Agilent, Santa Clara, CA, USA) in a 5 μL solution as input, following the manufacturer’s protocol except for a modification of library size selection to increase small RNA detection sensitivity and specificity. .. After 15 cycles of PCR for indexing and library enrichment, an equal volume of 10 μL PCR mix (library without size selection) per sample together with the same volume of the negative control were pooled, followed by DNA cleanup using DNA Clean & Concentrator (Zymo Research, Irvine, CA, USA) and mixed with 135 and 319 bp custom-made ladders targeting the library’s 16–24 miRNA cDNA insert. .. Next, precise size selection of the 135–319 bp library via 2.75% agarose gel electrophoresis was performed, and library concentration was measured by qPCR using the NEBNext Library Quant Kit (New England BioLabs) on a QuantStudio 5 Real-Time PCR System (Thermo Fisher Scientific).

    Article Title: Methods for the amplification of bisulfite-treated DNA
    Article Snippet: .. The size fractionation of the DNA fragments may be performed by methods known in the art such as gel fractionation, size exclusion chromatography, and through the use of commercially available kits such as EpiNextTM DNA Size Selection Kit (EpiGentek) and Select-a-Size DNA Clean & Concentrator (Zymo Research), for example. ..

    Negative Control:

    Article Title: Exosomal microRNAs from Alveolar Macrophages Reveal a Protective Role of the Lung Microbiome Against Oncogenic Signaling During PAH Exposure
    Article Snippet: To prepare the library, the NEBNext small RNA sample library preparation kit (New England BioLabs, Ipswich, MA, USA) was used with ~5 ng of total RNA determined by the Bioanalyzer RNA 6000 Pico Kit (Agilent, Santa Clara, CA, USA) in a 5 μL solution as input, following the manufacturer’s protocol except for a modification of library size selection to increase small RNA detection sensitivity and specificity. .. After 15 cycles of PCR for indexing and library enrichment, an equal volume of 10 μL PCR mix (library without size selection) per sample together with the same volume of the negative control were pooled, followed by DNA cleanup using DNA Clean & Concentrator (Zymo Research, Irvine, CA, USA) and mixed with 135 and 319 bp custom-made ladders targeting the library’s 16–24 miRNA cDNA insert. .. Next, precise size selection of the 135–319 bp library via 2.75% agarose gel electrophoresis was performed, and library concentration was measured by qPCR using the NEBNext Library Quant Kit (New England BioLabs) on a QuantStudio 5 Real-Time PCR System (Thermo Fisher Scientific).

    other:

    Article Title: FoTO1 orchestrates Taxol biosynthesis through catalytic and non-catalytic mechanisms
    Article Snippet: Proteins were tagged for Co-IP, immunoblot, TurboID, and BiFC by amplifying genes from plasmids or Agrobacterium glycerol stocks using PCR (PrimeStar, Takara Bio R045B, primers in Supplementary Table 3).

    Spectrophotometry:

    Article Title: Retracing and rewriting the evolutionary trajectories of mammalian developmental enhancers
    Article Snippet: .. All PCR steps were cleaned up with DNA Clean & Concentrator (Zymo Research), eluted in 12 μl of water and quantified with a spectrophotometer (Nanodrop). ..

    Fractionation:

    Article Title: Methods for the amplification of bisulfite-treated DNA
    Article Snippet: .. The size fractionation of the DNA fragments may be performed by methods known in the art such as gel fractionation, size exclusion chromatography, and through the use of commercially available kits such as EpiNextTM DNA Size Selection Kit (EpiGentek) and Select-a-Size DNA Clean & Concentrator (Zymo Research), for example. ..

    Size-exclusion Chromatography:

    Article Title: Methods for the amplification of bisulfite-treated DNA
    Article Snippet: .. The size fractionation of the DNA fragments may be performed by methods known in the art such as gel fractionation, size exclusion chromatography, and through the use of commercially available kits such as EpiNextTM DNA Size Selection Kit (EpiGentek) and Select-a-Size DNA Clean & Concentrator (Zymo Research), for example. ..



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